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npx @modelcontextprotocol/inspector --config mcp-config.json --server biothings-mcpGeneToolsProvides access to gene annotation and query services.
Read-only access to gene information.
VariantToolsProvides access to variant annotation and query services.
Read-only access to variant information.
ChemToolsProvides access to chemical compound annotation and query services.
Read-only access to chemical information.
TaxonToolsProvides access to taxonomic information.
Read-only access to taxonomic data.
DownloadToolsProvides file download and sequence analysis capabilities.
Allows writing files to the local file system.
The Biothings MCP server is generally safe for read-only operations. The risk increases when using the download tools due to potential write access and the lack of authentication. Exercise caution when using the file saving features and consider implementing additional security measures in production environments.